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(1) PUBLICATIONS in Computer Science in AI and Machine Learning

1. Winters-Hilt, S. Informatics and Machine Learning. Wiley Publishing. ISBN: 9781119716747.(2021).

2. Winters-Hilt, S. Data Analytics, Bioinformatics, and Machine Learning. ISBN: 9780578223025(2019).

3. Winters-Hilt S and Jiang Z. A hidden Markov model with binned duration algorithm. IEEE Trans. on Sig. Proc., Vol. 58 (2), Feb. 2010.

4. Winters-Hilt, S. and C. Baribault. A Meta-state HMM with application to gene structure identification in eukaryotes. EURASIP Journal of Advances in Signal Processing, Special Issue on Genomic Signal Processing (2010).

5. Winters-Hilt, S., Jiang, Z., and C. Baribault. Hidden Markov model with duration side-information for novel HMMD derivation, with application to eukaryotic gene finding. EURASIP Journal of Advances in Signal Processing, Special Issue on Genomic Signal Processing, 2010.

6. Churbanov, Alexander and S. Winters-Hilt. Implementing EM and Viterbi algorithms for Hidden Markov Model in linear memory. BMC Bioinformatics 2008, 9:228.

(2) PUBLICATIONS in Nanoscope & EE/ML/AI Signal Processing

7. Winters-Hilt, S. The Nanoscope. ISBN: 9780578223070. (2019).

8. Winters-Hilt, S. Channel current cheminformatics and stochastic carrier-wave signal processing. International Journal of Computing and Optimization, Vol. 4, 2017, no. 1, 115 – 157.

9. Winters-Hilt, S. Nanopore Transducer Engineering and Design. Int J MolBiol Med 2(1): doi http://dx.doi.org/10.16966/ijmbm.108 (2017).

10. Winters-Hilt, S. and A. Stoyanov. Nanopore Event-Transduction Signal Stabilization for Wide pH Range under Extreme Chaotrope Conditions. Molecules 2016, 21(3), 346 (2016).

11. Eren AM, Amin I, Alba A, Morales E, Stoyanov A, and Winters-Hilt S. Pattern Recognition Informed Feedback for Nanopore Detector Cheminformatics. Accepted paper in book “Advances in Computational Biology”, to be published by Springer in Advances in Experimental Medicine and Biology, AEMB 2010 book series.

12. Winters-Hilt S. The alpha-Hemolysin Nanopore Transduction Detector -- single-molecule binding studies and immunological screening of antibodies and aptamers. BMC Bioinf. 8 S7, S12 (2007).

13. Winters-Hilt, S., W. Vercoutere, V. S. DeGuzman, D. Deamer, M. Akeson, and D. Haussler, "Highly Accurate Classification of Watson-Crick Base-Pairs on Termini of Single DNA Molecules," Biophys. J. Vol. 84, pg 967, 2003.

14. DeGuzman V, Winters-Hilt S, Solbrig A, Sughrue W, Deamer D, Haussler D, Akeson M. Sequence-dependent fraying of single DNA molecules measured in real time at 5 angstrom resolution using an ion channel. Biophys J. 2003 84(2):490A-490A Part 2 Suppl.

15. W. Vercoutere, S. Winters-Hilt, V. S. DeGuzman, D. Deamer, S. Ridino, J. T. Rogers, H. E. Olsen, A. Marziali, and M. Akeson, "Discrimination Among Individual Watson-Crick Base-Pairs at the Termini of Single DNA Hairpin Molecules," Nucl. Acids Res. Vol.31, 1311-1318, 2003.

16. W. Vercoutere, S. Winters-Hilt, H. Olsen, D. Deamer, D. Haussler, and M. Akeson, "Rapid Discrimination Among Individual DNA Molecules at Single Nucleotide Resolution Using an Ion Channel," Nature Biotechnology, Vol. 19, pg 248, 2001.

(3) PUBLICATIONS in Physics

17. Winters-Hilt, S. Classical Mechanics and Chaos. ISBN: 9798988816010. (2023).

18. Winters-Hilt, S. The Dynamics of Fields, Fluids, and Gauges. ISBN: 9798988816027. (2023).

19 Winters-Hilt, S. The Dynamics of Manifolds. ISBN: 9798988816034. (2023).

20. Winters-Hilt, S. Quantum Mechanics and Path Integrals. ISBN: 9798894870113. (2024).

21. Winters-Hilt, S. Quantum Field Theory. ISBN: 9798894870106. (2024).

22. Winters-Hilt, S. Thermodynamics, Statistical Mechanics, and Black Hole Thermodynamics. ISBN: 9798894870090. (2024).

23. Winters-Hilt, S. Emanation, Emergence, and Eucatastrophe. ISBN: 9798988816003. (2023).

24. Winters-Hilt, S. Emanator Theory using split octonions is Manifestly Lorentz Invariant and reveals why the fundamental constant ℏ should be so small. Advanced Studies in Theoretical Physics, 2023.

25. Winters-Hilt, S. Unified propagator theory and a non-experimental derivation for the fine-structure constant. Advanced Studies in Theoretical Physics, Vol. 12, 2018, no. 5, 243-255. https://doi.org/10.12988/astp.2018.8626.

26. Winters-Hilt, S. Feynman-Cayley Path Integrals select Chiral Bi-Sedenions with 10-dimensional space-time propagation, Advanced Studies in Theoretical Physics, Vol. 9, 2015, no. 14, 667-683 (2015).

27. Winters-Hilt S, I. H. Redmount, and L. Parker, "Physical distinction among alternative vacuum states in flat spacetime geometries," Phys. Rev. D 60, 124017.

28. Friedman J. L., J. Louko, and S. Winters-Hilt, "Reduced Phase space formalism for spherically symmetric geometry with a massive dust shell," Phys. Rev. D 56, 7674-7691.

29. Louko J, J. Z. Simon, and S. Winters-Hilt, "Hamiltonian thermodynamics of a Lovelock black hole," Phys. Rev. D 55, 3525-3535.

30. Louko J and S. Winters-Hilt, "Hamiltonian thermodynamics of the Reissner-Nordstrom-anti de Sitter black hole," Phys. Rev. D 54, 2647-2663.

(4) PUBLICATIONS in Biology

31. Winters-Hilt, S. RNA-dependent RNA polymerase encoding artifacts in eukaryotic transcriptomes. Int. J. Mol. Genet Gene Ther 2(1), 2017: doi http://dx.doi.org/10.16966/2471-4968.108 .

32. Winters-Hilt, S. Alt-Splice Gene Predictor Using Multitrack-Clique Analysis: Verification of Statistical Support for Modelling in Genomes of Multicellular Eukaryotes. Informatics 2017, 4, 3; doi:10.3390/informatics4010003 (2017).

33. Winters-Hilt, S. Exploring protein conformation-binding relationships and antibody glyco-profiles using a nanopore transduction detector. Molecules & Medicinal Chemistry 2016; 2: e1378. doi: 10.14800/mmc.1378 (2016).

34. Winters-Hilt, S. Machine-learning based sequence analysis, bioinformatics & nanopore transduction detection. ISBN: 9781257645251. (2011).

35. Alexander Churbanov, Stephen Winters-Hilt, Eugene V Koonin and Igor B Rogozin. Accumulation of GC donor splice signals in mammals. Biology Direct 2008, 3:30.